Defended PhD theses

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hv.dekanaat [at] ut.ee

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Estonian Marine Institute

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Tartu Observatory

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Observatooriumi 1, Tõravere, 61602 Tartumaa
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Institutions

Library

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Youth Academy

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University of Tartu Natural History Museum and Botanical Garden

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Support Units

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Kalevi 24, 51010 Tartu
Tartu University Hospital

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University of Tartu Foundation

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View all other units

Faculty link:
www.ut.ee/en/other-units

2021

Dmytro Fishman “Developing a data analysis pipeline for automated protein profiling in immunology“, Tartu 2021 (video)
Supervisors: Assoc. Prof. Hedi Peterson, Prof. Jaak Vilo and Prof. Pärt Peterson (Institute of Biomedicine and Translational Medicine, University of Tartu)
Liis Kolberg “Developing and applying bioinformatics tools for gene expression data interpretation”, Tartu 2021 (video)
Supervisor: Assoc. Prof. Hedi Peterson,
Tauno Palts „A model for assessing computational thinking skills“, Tartu 2021 (video)
Supervisors: Prof. Margus Pedaste and Prof. Varmo Vene.
Kaido Lepik „Inferring causality between transcriptome and complex traits”, Tartu 2021, (video)
Supervisors: Sen. Res. Fellow Hedi Peterson and Prof. Jaak Vilo
Arnis Paršovs „Estonian Electronic Identity Card and its Security Challenges”, Tartu 2021 (video)
Supervisors: Dr. Jan Villemson (Cybernetica AS) and Prof. Dominique Unruh
Ljubov Jaanuska „Haar Wavelet Method for Vibration Analysis of Beams and Parameter Quantification“, Tartu 2021 (video)
Supervisor: Associate Professor emeritus Helle Hein

2020

Madis Vasser „Testing a Computational Theory of Brain Functioning with Virtual Reality”, Tartu 2020
Supervisor: Senior Research Fellow Jaan Aru (video)
Ardi Tampuu „Neural Networks for Analyzing Biological Data“, Tartu 2020 (video).
Supervisor: Prof. Raul Vicente
Orlenys López Pintado "Collaborative Business Process Execution on the Blockchain: The Caterpillar System", Tartu 2020 (video).
Supervisor: Prof. Marlon Dumas and dr Luciano García Bañuelos, Tecnologico de Monterrey, Mexico
Ilya Kuzovkin „Understanding Information Processing in Human Brain by Interpreting Machine Learning Models“, Tartu 2020 (video).
Supervisor: Prof. Raul Vicente
Janno Siim „Non-Interactive Shuffle Arguments“, Tartu 2020 (video).
Supervisor: Prof. Helger Lipmaa.
Behzad Abdolmaleki „On Succinct Non-Interactive Zero-Knowledge Protocols Under Weaker Trust Assumptions“, Tartu 2020.
Supervisor: Prof. Helger Lipmaa.
Karim Baghery „Reducing Trust and Improving Security in zk-SNARKs and Commitments”, Tartu 2020 (video)
Supervisor: Prof. Helger Lipmaa.
Adriano Augusto - „Accurate and Efficient Discovery of Process Models from Event Logs“, Tartu 2020 (video).
Supervisors: Prof. Marlon Dumas and Prof. Marcello La Rosa (University of Melbourne, Australia).
Faiz Ali Shah - „Extracting Information from App Reviews to Facilitate Software Development Activities“, Tartu 2020 (video).
Supervisors: Prof. Dietmar Pfahl and Res. fellow Kairit Sirts.

2019

Huishi Yin - "Using a Kano-like Model to Facilitate Open Innovation in Requirements Engineering", Tartu 2019.
Supervisor: Prof. Dietmar Pfahl.
Sulev Reisberg - "Developing computational solutions for personalized medicine", Tartu 2019 (video).
Supervisor: Prof. Jaak Vilo.
Tõnis Tasa - "Bioinformatics approaches in personalized pharmacotherapy", Tartu 2019 (video).
Supervisors: Prof. Jaak Vilo, Assoc. Prof. Tuuli Metsvaht (Institute of Clinical Medicine, UT) and Res. Prof. Lili Milani (Institute of Genomics, UT).
Elena Sügis - "Integration methods for heterogeneous biological data", Tartu 2019 (video).
Supervisors: Prof. Jaak Vilo and senior researcher Hedi Peterson.
Vijayachitra Modhukur - "Profiling of DNA methylation patterns as biomarkers of human disease", Tartu 2019 (video).
Supervisors: Prof. Jaak Vilo and Dr Balaji Rajashekar.
Toomas Krips - "Improving performance of secure real-number operations", Tartu 2019 (video).
Supervisors: AS Cybernetica's senior researcher Jan Villemson and Prof.Dominique Unruh.
Mohan Liyanage - „A Framework for Mobile Web of Things“, Tartu 2019 (video).
Supervisors: research professor Satish Srirama and researcher Chii Chang.
Irene Teinemaa - "Predictive and Prescriptive Monitoring of Business Process Outcomes", Tartu 2019 (video).
Supervisors: Prof.Marlon Dumas ja associate professor Fabrizio Maggi.
Yauhen Yakimenka - "Failure Structures of Message-Passing Algorithms in Erasure Decoding and Compressed Sensing", Tartu 2019 (video).
Supervisor: associate professor Vitaly Skachek.
Ilya Verenich - "Explainable Predictive Monitoring of Temporal Measures of Business Processes“, Tartu 2019 (video).
Supervisors: Prof.Marlon Dumas, associate professor Fabrizio Maggi, prof Marcello La Rosa (University of Melbourne), Prof.Arthur ter Hofstede (Queensland University of Technology).
Ehsan Ebrahimi - "Post-Quantum Security in the Presence of Superposition Queries“, Tartu 2019 (video).
Supervisor: Prof.Dominique Unruh.

2018

Riivo Kikas "Analysis of issue and dependency management in open-source software projects".Tartu, 2018.
Supervisors: prof Marlon Dumas and prof Dietmar Pfahl (Video)
Abdullah Makkeh - „Applications of Optimization in Some Complex Systems”. Tartu, 2018.
Supervisor: dots Dirk Oliver Theis (Video)

2017

Eno Tõnisson - "Differences between Expected Answers and the Answers Offered by Computer Algebra Systems to School Mathematics Equations". Tartu, 2017. Supervisor: Rein Prank (Video)
Kristjan Korjus - "Analyzing EEG data and improving data partitioning for machine learning algorithms". Tartu, 2017. Supervisor: Raul Vincente Zafra (Video)
Toomas Saarsen - "On the Structure and Use of Process Models and their Interplay". Tartu, 2017. Supervisor: Marlon Dumas (Video)
Alisa Pankova - "Efficient multiparty computation secure against covert and active adversaries". Tartu, 2017. Supervisors: Peeter Laud, Sven Laur (Video)
Jaak Randmets - "Programming Languages for Secure Multi-party Computation Application Development". Tartu, 2017. Supervisors: Peeter Laud, Varmo Vene (Video)
Mozghan Pourmoradnasseri - „Some Problems Related to Extensions of Polytopes“. Tartu, 2017. Supervisor: Dirk Oliver Theis (Video)
Anna Leontjeva - "Using Generative Models to Combine Static and Sequential Features for Classification". Tartu, 2017. Supervisors: Jaak Vilo, Marlon Dumas (Video)
Pelle Jakovits "Adapting scientific computing algorithms to distributed computing frameworks". Tartu, 2017. Supervisor: Satish Srirama (Video)
Prastudy Mungkas Fauzi „Efficient Non-Interactive Zero-Knowledge Protocols in the CRS Model“. Tartu, 2017. Supervisor: Helger Lipmaa (Video)
Siim Orasmaa „Explorations of the Problem of Broad-coverage and General Domain Event Analysis: The Estonian Experience". Tartu, 2017. Supervisor: Heiki-Jaan Kaalep (Video)

2016

Riivo Talviste "Applying Secure Multi-Party Computation in Practice". Tartu, 2016 Supervisors: Sven Laur, Dan Bogdanov (video)
Tauno Metsalu "Statistical analysis of multivariate data in bioinformatics". Tartu, 2016. Supervisor: Jaak Vilo (video)

2015

Huber Raul Flores Macario "Service-oriented and Evidence-aware Mobile Cloud Computing" . Tartu, 2015. Supervisor: Satish Srirama (video )
Fredrik Payman Milani "On Sub-Processes, Process Variation and their Interplay: An Integrated Divide-and-Conquer Method for Modeling Business Processes with Variation" . Tartu, 2015. Supervisors: Marlon Dumas, Raimundas Matulevicius (video )
Abel Armas Cervantes "Diagnosing Behavioral Differences between Business Process Models" . Tartu, 2015. Supervisors: Marlon Dumas, Luciano Garcia Banuelos (video )
Liina Kamm "Privacy-preserving statistical analysis using secure multi-party computation". Tartu, 2015. Supervisor: Sven Laur (video)

2014

Naved Ahmed "Deriving Security Requrements from Business Process Models". Supervisors: Raimundas Matulevicius, Marlon Dumas
Vladimir Šor "Statistical Approach for Memory Leak Detection in Java Applications". Tartu, 2014. Supervisor: Satish Srirama (video)
Raivo Kolde "Methods for re-using public gene expression data". Tartu, 2014. Supervisor: Jaak Vilo (video)

2013

Margus Freudenthal Simpl: A Toolkit for Domain-Specific Language Development in Enterprise Information Systems. Tartu, 2013. Supervisor: Marlon Dumas
Jevgeni Kabanov Towards a more productive Java EE ecosystem. Tartu, 2013. Supervisor: Varmo Vene
Dan Bogdanov Sharemind: Programmable Secure Computations with Practical Applications. Tartu, 2013. Supervisor: Sven Laur (video)

2012

Georg Singer Web Search Engines and Complex Information Needs. Tartu, 2012. Supervisors: Eero Vainikko, Ulrich Norbisrath, Dirk Lewandowski (video)
Uuno Puus Structural performance as a success factor in software development projects – Estonian experience. Tartu, 2012. Supervisors: Tõnis Mets, Jüri Kiho

2011

Reina Uba Merging Business Process Models. Tartu, 2011. Supervisors: Jaak Vilo, Marlon Dumas, Marcello La Rosa (video)
Bingsheng Zhang Efficient Cryptographic Protocols for Secure and Private Remote Databases. Tartu, 2011. Supervisors: Helger Lipmaa, Peeter Laud (video)
Meelis Kull Statistical Enrichment Analysis in Algorithms for Studying Gene Regulation. Tartu, 2011. Supervisor: Jaak Vilo
Dmitri Lepp Solving Simplification Problems in the Domain of Exponents, Monomials and Polynomials in Interactive Learning Environment T-algebra. Tartu, 2011. Supervisor: Rein Prank
Margus Treumuth A Framework for Asynchronous Dialogue Systems: Concepts, Issues and Design Aspects. Tartu, 2011. Supervisors: Päivi Kristiina Jokinen, Mare Koit
Siim Karus Maintainability of XML Transformations. Tartu, 2011. Supervisors: Helle Hein, Marlon Dumas
Margus Niitsoo Black-box Oracle Separation Techniques with Applications in Time-stamping. Tartu, 2011. Supervisor: Ahto Buldas
Mark Fišel Optimizing Statistical Machine Translation via Input Modification. Tartu, 2011. Supervisors: Mare Koit, Joakim Nivre

2010

Vesal Vojdani. Static Data Race Analysis of Heap-Manipulating C Programs. Tartu, 2010. Supervisors: Varmo Vene, Helmut Seidl
Ahti Peder. Superpositional Graphs and Finding the Description of Structure by Counting Method. Tartu, 2010. Supervisor: Mati Tombak
Jüri Reimand. Functional analysis of gene lists, networks and regulatory systems. Tartu, 2010. Supervisor: Jaak Vilo
Reimo Palm. Numerical comparison of regularization algorithms for solving ill-posed problems. Tartu, 2010. Supervisor: Uno Hämarik

2008

Mart Anton. Mechanical modeling of IPMC actuators at large deformations. Tartu, 2008. Supervisors: Jan Villemson, Alvo Aabloo, Maarja Kruusmaa
Kaarel Kaljurand. Attempto Controlled English as a Semantic Web Language. Tartu, 2008. Supervisors: Kaili Müürisep, Norbert E. Fuchs

2007

Marina Lepp. Solving of linear equations, linear inequalities and systems of linear equations in interactive learning environment. Tartu, 2007. Supervisor: Rein Prank

2006

Härmel Nestra. Iteratively defined transfinite trace semantics and program slicing with respect to them. Tartu, 2006. Supervisor: Varmo Vene
Kristo Heero. Path Planning and Learning Strategies for Mobile Robots in Dynamic Partially Unknown Environments. Tartu, 2006. Supervisors: Jan Villemson, Maarja Kruusmaa

2002

Jan Villemson. Size-efficient interval time stamps. Tartu, 2002. Supervisors: Mati Tombak, Ahto Buldas

2001

Tiina Puolakainen. Computer grammar of Estonian : morphological disambiguation. Tartu, 2001. Supervisor: Mare Koit

2000

Olga Sokratova. Ω-rings, their flat and projective acts with some applications. Tartu, 2000. Supervisor: Uno Kaljulaid
Varmo Vene. Categorical programming with inductive and conductive types. Tartu, 2000. Supervisor: Merik Meriste
Kaili Müürisep. Computer grammar of Estonian: syntax. Tartu, 2000. Supervisor: Mare Koit

1999

Helger Lipmaa. Secure and efficient time-stamping systems. Tartu, 1999. Supervisor: Mati Tombak

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